PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g066000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 352aa    MW: 39169.9 Da    PI: 6.6344
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g066000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.21.2e-3141146199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..s 88 
                     f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  Csa04g066000.1  41 FDKVVTPSDVGKLNRLVIPKQHAERFfpldSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRCvGDsgR 135
                     89****************************66677899*************************************************44333246 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l++ ++r+
  Csa04g066000.1 136 DSRLFIDWRRR 146
                     77788888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-4132148IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.72E-3038133IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-2439141No hitNo description
SMARTSM010199.5E-2341147IPR003340B3 DNA binding domain
PROSITE profilePS5086314.74841147IPR003340B3 DNA binding domain
PfamPF023627.5E-2941146IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MMTNLSLSRD GDEEEEDEEE KKPLQEGGEG AREVVEREHM FDKVVTPSDV GKLNRLVIPK  60
QHAERFFPLD SSSNEKGLLL NFEDLTGKSW RFRYSYWNSS QSYVMTKGWS RFVKDKKLDA  120
GDIVSFQRCV GDSGRDSRLF IDWRRRPKVP DHHPHFSAGA MFPRFYSFPS TSYNLYNHQQ  180
QRHHHHHGGG YDYHQIPREF GYGYFVRSVD QRVSSSAAVV ADPLVIESVP VMMHGRANQG  240
LVGTAGKRLR LFGVDMECGE SGMTTNSTEE ESSSSGGSLP RGSGASSSPS LFQLRLGSNX  300
EEESSSSGGS LPRGSGASSS PSLFQLRLGS NSEDDHFSKK GKSSLSFDLD Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-473814611117DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0044110.0AC004411.3 Arabidopsis thaliana chromosome 2 clone F14M4 map CIC06C03, complete sequence.
GenBankAC0053100.0AC005310.3 Arabidopsis thaliana chromosome 2 clone F19D11 map CIC06C03, complete sequence.
GenBankAK1180450.0AK118045.1 Arabidopsis thaliana At2g46870 mRNA for putative RAV-like B3 domain DNA binding protein, complete cds, clone: RAFL19-27-L04.
GenBankBT0085340.0BT008534.1 Arabidopsis thaliana clone U50690 putative RAV B3 domain DNA binding protein (At2g46870) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankFJ8737310.0FJ873731.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA1 (NGA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506703.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X3
SwissprotO827990.0NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLC3VMM20.0C3VMM2_ARATH; NGATHA1
STRINGAT2G46870.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-152B3 family protein